Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs11500298 | chr11:34924316 | T/C | 5.16E-13 | 507 | 37.73 | 26.12 | 3.48 | KM Plot |
KIRC | rs11527653 | chr10:33054092 | T/G | 2.95E-6 | 507 | 37.37 | 37.53 | 7.33 | KM Plot |
KIRC | rs115417886 | chr4:169163445 | G/C | 2.27E-8 | 507 | 37.18 | 38.45 | 3.1 | KM Plot |
KIRC | rs11574635 | chr16:31368816 | C/G | 6.18E-5 | 509 | 36.9 | 43.8 | 10.43 | KM Plot |
KIRC | rs115780770 | chr4:169161306 | G/A | 2.16E-8 | 508 | 37.18 | 39.23 | 3.1 | KM Plot |
KIRC | rs11610197 | chr12:29512940 | C/T | 5.58E-9 | 507 | 37.73 | 33.93 | 6.07 | KM Plot |
KIRC | rs11611420 | chr12:29539524 | G/T | 2.9E-9 | 503 | 37.7 | 33.13 | 6.07 | KM Plot |
KIRC | rs11613628 | chr12:29479961 | T/C | 6.25E-9 | 503 | 37.67 | 37.25 | 6.07 | KM Plot |
KIRC | rs116164723 | chr16:2954891 | C/T | 1.39E-5 | 499 | 37.18 | 37.9 | 9.37 | KM Plot |
KIRC | rs116170219 | chr20:45116151 | T/G | 9.36E-14 | 505 | 37.53 | 35.43 | 2.17 | KM Plot |
KIRC | rs116201501 | chr6:25999149 | C/T | 1.4E-8 | 503 | 37.53 | 36.87 | 3.37 | KM Plot |
KIRC | rs11621849 | chr14:25405621 | A/G | 4.47E-10 | 509 | 36.72 | 51.25 | 10.97 | KM Plot |
KIRC | rs11622323 | chr14:89981941 | G/A | 6.89E-7 | 503 | 37.42 | 40.1 | 3.6 | KM Plot |
KIRC | rs11639879 | chr16:2953778 | G/T | 1.43E-5 | 498 | 37.03 | 39.23 | 9.37 | KM Plot |
KIRC | rs11641900 | chr16:2951460 | A/G | 1.43E-5 | 498 | 37.03 | 39.23 | 9.37 | KM Plot |